Livoa LogoLivoa
Aim 1: Data Curation,
Venom Peptide Databases UniProt & ToxinProt
Data Curation & Redundancy Removal
Motif Discovery MEME Suite
3D Structure Prediction AlphaFold2 / RosettaFold
Annotated Peptide Library
Aim 2: Energetic Profiling
Disease Targets e.g., Oncoproteins
Molecular Docking HADDOCK
Molecular Dynamics GROMACS/AMBER
Binding Free Energy MM/GBSA
Energetic Profiles & Interaction Hotspots
Aim 3: Machine Learning
Integrated Feature Set
Feature Engineering
Train Ensemble ML Model Random Forest, XGBoost
Ranked Candidate List
Validated Pipeline & Shortlist for Experimental Validation

Workflow

by Diya

0
0 uses