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Query
Retriever


Filter + Image

LLM
Evidence Summary


Limitations

Source Excerpts

Output "card"

Knowledge Base (KB)


Pinecone?

PubMed


abstracts on FA, ferroptosis, omav, NRF2

FertDb V2


ferroptosis genes and compounds

DrugBank


drug targets and MOA

Reactome


FA, ferroptosis, NRF2 pathways

"Live Search" - FA, ferroptosis, omav, nrf2
Update if important
Extract info
Query + KB info + Live Update from PubMed
Integrate and Provide results
Initial Data addition into knowledge base (Manually update all periodically except for PubMed) - PubMed, chunk + embed - FertDb V2, convert to short narratives (2-3 sentences which is equivalent to a chunk) and embed - DrugBank, same as FertDb V2 for FA, ferroptosis, and NRF2 drugs - Reactome, same as FertDb V2 for FA, ferroptosis, and NRF2 pathways - For Daily Med, extract Omav label, convert to narratives (which are chunks), and embed

RAG Workflow

by Miller

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